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TRUST repeat detection method

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TRUST is a method for ab-initio determination of internal repeats in proteins. The high sensitivity and accuracy of the method is achieved by exploiting the concept of transitivity of alignments.

Reference: ISMB/ECCB 2004 conference (Glasgow, UK), appeared in Bioinformatics. 2004 Aug 4;20 Suppl 1:i311-i317. PubMed Preprint

Source: Available to download here.
Paste in your sequences in FASTA format or


Select Gap Penalties:

 Open     Extension

Select a substitution matrix:

Force including local alinments in analysis
(relax statistical significance constraints):

Seg low-complexity filtering:

 Submit your job

Interface written by Radek Szklarczyk, Victor A. Simossis and Jaap Heringa

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