NatalieQ is a web server for aligning two protein-interaction networks in order to highlight conserved subnetworks.
It is an interface to the more general network alignment method Natalie.
NatalieQ is a joint project between the Centrum Wiskunde & Informatica (CWI) and the Centre for Integrative Bioinformatics VU (IBIVU).
El-Kebir, M., Brandt, B.W., Heringa, J. and Klau, G.W. (2014)
NatalieQ: A web server for protein-protein interaction network querying.
BMC Systems Biology 7: 80.
El-Kebir, M., Heringa, J. and Klau, G.W. (2011) Lagrangian relaxation applied to sparse global network alignment.
In: Proc. 6th IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2011).
LNCS 7036, pp. 225-236, Springer, 2011.
STRING:
Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., Jensen, L.J. and von Mering, C. (2011)
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Reseach 39: D561-D568.
IntAct:
Kerrien, S., Aranda, B., Breuza, L., Bridge, A., Broackes-Carter, F., Chen, C., Duesbury, M., Dumousseau, M., Feuermann, M., Hinz, U., Jandrasits, C., Jimenez, R.C., Khadake, J., Mahadevan, U., Masson, P., Pedruzzi, I., Pfeiffenberger, E., Porras, P., Raghunath, A., Roechert, B., Orchard, S. and Hermjakob, H. (2012)
The IntAct molecular interaction database in 2012.
Nucleic Acids Research 40: D841-D846.
