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VerAlign multiple sequence alignment comparison

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Full Documentation (PDF 63K)

VerAlign is a comparison program that assesses the quality of a test alignment against a reference version of the same alignments.
Paste in your reference alignment in MSF or FASTA format:

Or Upload a reference MSF or FASTA file

     Paste in your test alignment in MSF or FASTA format:

Or Upload a test MSF or FASTA file

Enter a name for your job

Select a scoring method:
CS, SP and SPdist Score
Column Score
Sum-of-Pairs Score

SPdist bin ranges (comma-separated)

SPdist bin weights (comma-separated)

Interface written by Punto Bawono , Victor A. Simossis and Jaap Heringa

(c) IBIVU 2021. If you are experiencing problems with the site, please contact the webmaster.